2014

  • Cruz, G.M.Q. et al. Virus-Like Attachment Sites and Plastic CpG Islands: Landmarks of Diversity in Plant Del Retrotransposons. Plos One, v. 9, p. e97099, 2014.
  • de Setta, N. et al. ; Building the sugarcane genome for biotechnology and identifying evolutionary trends. BMC Genomics, v. 15, p. 540, 2014.

2013

  • Varani, A.M. et al. The Role of Prophage in Plant Pathogenic Bacteria. Annual Review of Phytopathology (Print), v. 51, p. 429, 2013.
  • Darrase, A.C. et al. Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. BMC Genomics, v. 14, p. 761, 2013.
  • Monteiro-Vitorello, C.B. et al. Complete Genome Sequence of Leifsonia xyli subsp. cynodontis Strain DSM46306, a Gram-Positive Bacterial Pathogen of Grasses. Genome Announcements, v. 1, p. e00915-13-e00915-13, 2013.
  • Garcia, A.A.F. et al. SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids. Scientific Reports, v. 3, p. 3399, 2013.

2012

  • Jesus, E.M. et al. Diversification of hAT transposase paralogues in the sugarcane genome. Molecular Genetics and Genomics (Print), v. 287, p. 205-219, 2012.
  • Domingues, D.S. et al. Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns. BMC Genomics, v. 13, p. 137, 2012.
  • Palhares, A. C. et al. A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers. BMC Genetics (Online), v. 13, p. 51, 2012.
  • Vicentini, R. et al. Gene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAs. Tropical Plant Biology (Online), v. 1, p. 1, 2012.
  • Manetti, M. et al. Mutator System Derivatives Isolated from Sugarcane Genome Sequence. Tropical Plant Biology (Online), v. 10.100, p. 10.1007/s12042-, 2012.
  • Kajihara, D. et al. Functional characterization of sugarcane mustang domesticated transposases and comparative diversity in sugarcane, rice, maize and sorghum. Genetics and Molecular Biology (Impresso), v. 35, p. 632-639, 2012.
  • Varani, A.M. et al. Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains. Genetics and Molecular Biology (Impresso), v. 35, p. 149-152, 2012.

2011

  • Setta, N. et al. Copia Retrotransposon in the Zaprionus Genus: Another Case of Transposable Element Sharing with the Drosophila melanogaster Subgroup. Journal of Molecular Evolution, v. 72, p. 326-338, 2011.
  • Garsmeur, O. et al. High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. New Phytologist (Print), v. 189, p. 629-642, 2011.
  • Ryan, R.P. et al. Pathogenomics of Xanthomonas: understanding bacterium plant interactions. Nature Review, Microbiology (Print), v. 9, p. 344-355, 2011.
  • Bogdanove, A.J. et al. Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. Journal of Bacteriology (Print), v. 193, p. 5450-5464, 2011.
  • Souza, G.M. et al. The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome. Tropical Plant Biology (Online), v. 4, p. 145-156, 2011.

2010

  • Freschi, L. et al. Nitric Oxide Mediates the Hormonal Control of Crassulacean Acid Metabolism Expression in Young Pineapple Plants. Plant Physiology (Bethesda), v. 152, p. 1971-1985, 2010.
  • Kamenetzky, L. et al. Genomic Analysis of Wild Tomato Introgressions Determining Metabolism- and Yield-Associated Traits. Plant Physiology (Bethesda), v. 152, p. 1772-1786, 2010.
  • Wang, J. et al. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. BMC Genomics, v. 11, p. 261, 2010.
  • Lang, J.M. et al. Genomics-Based Diagnostic Marker Development for pv. and pv.. Plant Disease, v. 94, p. 311-319, 2010.
  • Souza, B.M. et al. Axillary bud development in pineapple nodal segments correlates with changes on cell cycle gene expression, hormone level, and sucrose and glutamate contents. In Vitro Cellular & Developmental Biology. Plant, v. 46, p. 281-288, 2010.
  • Hotta, C.T. et al. The Biotechnology Roadmap for Sugarcane Improvement. Tropical Plant Biology (Online), v. 3, p. 75-87, 2010.

2009

  • Manetti, M.E. et al. The Tnt1 family member Retrosol copy number and structure disclose retrotransposon diversification in different Solanum species. Molecular Genetics and Genomics, v. 281, p. 261-271, 2009.
  • de Setta, N. et al. Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila. BMC Evolutionary Biology (Online), v. 9, p. 279, 2009.
  • Freschi, L. et al. Thermoperiod affects the diurnal cycle of nitrate reductase expression and activity in pineapple plants by modulating the endogenous levels of cytokinins. Physiologia plantarum (Kobenhavn. 1948), v. 137, p. 201-212, 2009.

2008

  • Lima, W. et al. Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism.. FEMS Microbiology Letters, v. 281, p. 87-97, 2008.
  • Zerillo, M.M. Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli. BMC Microbiology (Online), v. 8, p. 127, 2008.
  • Bermudez, L. et al. A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. Journal of Experimental Botany, v. 59, p. 2875-2890, 2008.
  • Menossi, M. et al. Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development, v. 2008, p. 1-12, 2008.
  • Salzberg, S.L.S. et al. Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics, v. 9, p. 204, 2008.
  • de Mello Varani, A. et al. Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation, v. 3, p. e4059, 2008.
  • Lu, H. et al. Acquisition and Evolution of Plant Pathogenesis Associated Gene Clusters and Candidate Determinants of Tissue-Specificity in Xanthomonas, v. 3, p. e3828, 2008.

2007

  • Setta, N. et al. Transposon Display supports transpositional activity of P element in species of the saltans group of Drosophila. Journal of Genetics, v. 86, p. 37-43, 2007.
  • Manetti, M.E. et al. Radiation of the Tnt1 retrotransposon superfamily in three Solanaceae genera.. BMC Evolutionary Biology (Online), v. 7, p. 34, 2007.
  • Gonçalves, E.G. et al. Combined genotypic-phenotypic phylogeny of the tribe Spathicarpeae (Araceae) with reference to independent events of invasion to Andean regions.. Molecular Phylogenetics and Evolution, v. jan, p. in press, 2007.

2006

  • Marques, D.A. et al. Biotechnology approaches for production of antiulcerogenic dihydro-epideoxyarteannin B isolated from Artemisia annua L.. Revista Brasileira de Farmacognosia, v. 16, p. 291-299, 2006.
  • Godoi, P. et al. Structure of the Thiazole Biosynthetic Enzyme THI1 from Arabidopsis thaliana. The Journal of Biological Chemistry, v. 281, p. online, 2006.
  • Saccaro-Junior, N. L. et al. MudrA-like sequences from rice and sugarcane cluster as two bona fide transposon clades and two domesticated transposases. Gene (Amsterdam), v. 6, p. in press, 2006.
  • Reis L.F. et al. GMOs: building the future on the basis of past experience. Anais da Academia Brasileira de Ciências, v. 78, p. 667-686, 2006.
  • Pacheco, F.H.T. et al. Characterization of Agrobacterium tumefaciens Strains Isolated from Brazilian Plant Species. American Journal of Plant Physiology, v. 2, p. 142-150, 2006.

2005

  • Grandbastien, M.A. et al. Stress Activation And Genomic Impact Of Tnt1 Retrotransposons In Solanaceae. Cytogenetic and Genome Research, v. 110, n.1-4, p. 229-241, 2005.
  • Morgante, P.G. et al. Functional XPB/RAD25 redundancy in Arabidopsis genome: characterization of AtXPB2 and expression analysis. Gene (Amsterdam), Holanda, v. 344, p. 93-103, 2005.
  • Chen, J. et al. Genetic Discovery in Xylella fastidiosa Through Sequence Analysis of Selected Randomly Amplified Polymorphic DNAs. Current Microbiology, v. 50, n.2, p. 78-83, 2005.
  • Ribeiro, D. et al. Functional characterization of the thi1 promoter region from Arabidopsis thaliana. Journal of Experimental Botany, v. 56, n.417, p. 1797-1804, 2005.
  • Monteiro-Vitorello, C.B. et al. Xylella and Xanthomonas mobil`omics. Journal of Integrative Biology/Omics (Larchmont), v. 9, n.2, p. 146-159, 2005.
  • Lima, W. et al. Non-gamma-proteobacteria gene islands contribute to the Xanthomonas genome. Journal of Integrative Biology/Omics (Larchmont), v. 9, n.2, p. 160-172, 2005.
  • Araújo, P.G. et al. Transcriptionally active transposable elements in recent hybrid sugarcane.. Plant Journal, v. 44, n.5, p. 707-717, 2005.

2004

  • Nascimento, A.L. et al. Genome features of Leptospira interrogans serovar Copenhageni. Brazilian Journal of Medical and Biological Research, v. 37, n.4, p. 459-477, 2004.
  • Nascimento, A.L. et al. Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis. Journal of Bacteriology, v. 186, n.7, p. 2164-2172, 2004.
  • Vincentz, M. et al. Evaluation of monocot and eudicot divergence using the sugarcane transcriptome. Plant Physiology (Bethesda), v. 134, n.3, p. 951-959, 2004.
  • Rossi, M. et al. Comparative analysis of sugarcane Mutator-like transposases. Molecular Genetics and Genomics, v. 272, p. 194-203, 2004.
  • Monteiro-Vitorello, C.B. et al. The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli. Molecular Plant-Microbe Interactions, v. 17, n.8, p. 827-836, 2004.

2003

  • Sluys, M.A.V. et al.Comparative Analyses of the Complete Genome Sequences of Pierce's Disease and Citrus Variegated Chlorosis Strains of Xylella fastidiosa. Journal of Bacteriology, v. 185, p. 1018-1026, 2003.
  • Chabregas, S.M. et al. Differential usage of two-frame translational start codons regulates subcellular localization of Arabidopsis thaliana THI 1. Journal of Cell Science, v. 116, p. 285-291, 2003.
  • Papiniterzi, F.S. Point Mutation is Responsible for Arabidopsis tz-201 Mutant Phenotype Affecting Thiamin Biosynthesis. Plant and Cell Physiology, v. 44, n.8, p. 865-860, 2003.
  • Rossi, M. et al. Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane. Molecular Genetics and Genomics, v. 269, n.3, p. 406-419, 2003.
  • Vettore, A.L. et al. Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane. Genome Research, v. 13, n.12, p. 2725-2735, 2003.

2002

  • Sluys, M.A.V. et al. Comparative genomic analysis of plant-associated bacteria. Annual Review of Phytopathology (Print), Estados Unidos, v. 40, p. 169-189, 2002.
  • Silva, A.C. et al. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature (London), Estados Unidos, v. 417, p. 459-453, 2002.

2001

  • Araújo, P.G. et al. Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus. Molecular and General Genetics, v. 266, n.1, p. 35-41, 2001.
  • Chabregas, S.M. et al. Dual targetting properties of the N-terminal signal sequence of Arabidopsis thaliana THI1 protein to mitochondria and chloroplast. Plant Molecular Biology, v. 46, p. 639-650, 2001.
  • Morgante, P.G. et al. Shoot regeneration capacity from roots and transgenic hairy roots of different tomato cultivars and wild related species. Plant Cell, Tissue and Organ Culture, v. 65, p. 37-44, 2001.
  • Salatino, A. et al. Phylogenetic inference in Velloziaceae using chloroplast trnL-F sequences.. Systematic Botany, v. 26, p. 92-103, 2001.
  • Costa, R. et al. The participation of AtXPB1, the XPB/RAD25 homologue gene from Arabidopsis thaliana, in DNA repair and plant development. Plant Journal, v. 28, p. 385-395, 2001.
  • Rossi, M. et al. Survey of transposable elements in sugarcane expressed sequence tags (ESTs). Genetics and Molecular Biology, Estados Unidos, v. 24, p. 147-154, 2001.

2000-older

  • Simpson, A.J.G. et al. The genome sequence of the plant pathogen Xylella fastidiosa. Nature (London), v. 406, p. 151-157, 2000.
  • Scortecci, K.C. et al. Negative effect of the 5'untranslated leader sequence on the Ac transpososn promoter expression. Plant Molecular Biology, Estados Unidos, v. 40, p. 935-944, 1999.
  • Hashimoto, R.Y. et al. Negative selection driven by the cytosine deaminase gene in Lycopersicon esculentum hairy roots. Plant Science (Limerick), v. 141, n.2, p. 175-181, 1999.
  • Costa et al. Retrolyc1-1, a member of the Tnt1 retrotransposon super-family in the Lycopersicon peruvianum genome. Genetica (The Hague), Estados Unidos, v. 107, p. 65-72, 1999.
  • Ribeiro, D. et al. Cloning Of A cDNA Of Arabidopsis thaliana Homologous To The Human Xpb Gene. Gene (Amsterdam), Estados Unidos, v. 208, p. 207-213, 1998.
  • Scortecci, K.C. et al. Somatic Excision Of The Ac Transposable Element In Transgenic Arabidopsis Thaliana After 5-Azacytidine Treatment. Plant and Cell Physiology, v. 38, p. 336-343, 1997.
  • Van-Sluys, M.A. et al. Gene Transfer From Agrobacterium To Plants.. Ciência e Cultura (SBPC), v. 44, n.5, p. 0-0, 1993.
  • Sluys, M.A.V. et al. DNA Methylation Associated To Ac Element In Arabidopsis. Plant Physiology and Biochemistry (Paris), Europa, v. 31, n.6, p. 805-813, 1993.
  • Sluys, M.A.V. & Tempe, J. Behavior Of The Maize Transposable Element Activator In Daucus Carota. Molecular and General Genetics, v. 219, p. 313-319, 1989.
  • Cardarelli, M. et al. The Role Of Auxin In Hairy Root Induction. Molecular and General Genetics, v. 208, p. 457-463, 1987.
  • Sluys, M.A.V. et al. Studies On The Introduction And Mobility Of The Maize Activator Element In Arabidopsis Thaliana And Daucus Carota. EMBO Journal, Europa, v. 6, p. 3881-3889, 1987.
  • Sluys, M.A.V. et al. Ascorbate-Copper Induce Dna Lesions And Repair In Escherichia Coli K12cells. Carcinogenesis (New York), v. 7, p. 197-200, 1986.
  • Sluys, M.A.V. et al. Escherichia Coli Xth A Mutant Is Not Hypersensitive To Ascorbic Acid-Cooper Treatment: An H2O2 Reaction. Mutation Research, v. 174, p. 265-269, 1986.